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lu trees soil mycorr bacteria tube notes  
 

Publications

 
Publications 2009

  • Hedh, J., Johansson, T. & Tunlid, A. (2009) Variation in host specificity and gene content in strains from genetically isolated lineages of the ectomycorrhizal fungus Paxillus involutus s. lat. Mycorrhiza 19:549-558

  • Rajashekar, B., Kohler A., Johansson, T., Martin, F., Tunlid, A. & Ahrén, D. (2009) Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor – evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases. New Phytologist 183:365-379

  • Strandh, M., Johansson, T. & Löfstedt, C. (2009) Global transcriptional analysis of pheromone biosynthesis-related genes in the female turnip moth, Agrotis segetum (Noctuidae) using a custom-made cDNA microarray. Insect Biochemistry and Molecular Biology 39:484-489

  • Ladygina, N., Johansson, T., Canbäck, T., Tunlid, A. & Hedlund, K. (2009) Diversity of bacteria associated with grassland soil nematodes of different feeding groups. FEMS Microbiology Ecology 69:53-61

  • Wallander H., Mörth C.-M. & Giesler R. (2009) 15N enrichment in soil profiles in relation to microbial community composition along a chronosequence in the upheaval region of northern Sweden. Oecologia 168:87-96

  • Rousk, J., Aldén-Demoling, L. & Bååth, E. (2009) Contrasting short-term antibiotic effects on respiration and bacterial growth compromises the validity of the selective respiratory inhibition technique to distinguish fungi and bacteria. Microbial Ecology, in press, DOI: 10.1007/s00248-008-9444-1.

  • Rousk, J., Brookes, P.C. & Bååth, E. (2009) Contrasting soil pH effects on fungal and bacterial growth suggests functional redundancy in carbon mineralization. Applied and Environmental Microbiology 75:1589-1596.

  • Barcenas Moreno, G., Gomez, M., Rousk, J. & Bååth, E. (2009) Adaptation of soil microbial communities to temperature: Comparison of fungi and bacteria in a laboratory experiment. Global Change Biology, Accepted for publication.

  • Rousk, J. & Nadkarni, N.M. (2009) Growth measurements of saprotrophic fungi and bacteria reveal differences between canopy and forest floor soils. Soil Biology & Biochemistry 41:862-865

  • Rinnan, R., Rousk, J., Yergeau, E., Kowalchuk, G.A. & Bååth, E. (2009) Temperature adaptation of soil microbial communities along an Antarctic climate gradient: Predicting responses to climate warming. Global Change Biology. Accepted.

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Publications 2008
 

  • Fekete C., Tholander M., Rajashekar B., Ahrén D., Friman E., Johansson T. & Tunlid A. (2008) Paralysis of nematodes: shifts in transcriptome of the nematode-trapping fungus Monacrosporium haptotylum during infection of Caenorhabditis elegans. ENVIRONMENTAL MICROBIOLOGY. 10(2):364-75. PMID: 18028414

  • Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buee M, Brokstein P, Canbäck B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbe J, Lin YC, Legue V, Le TF, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kues U, Lucas S, Van de PY, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouzé P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, & Grigoriev IV (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. NATURE 452:88-92

  • Aldén Demoling, L. & Bååth, E. (2008) The use of leucine incorporation to determine the toxicity of phenols to bacterial communities extracted from soil. APPLIED SOIL ECOLOGY, 38(1):34-41

  • Aldén Demoling L. and Bååth E. (2008) Use of pollution-induced community tolerance of the bacterial community to detect phenol toxicity in soil. Environmental Toxicology and Chemistry 27, 334-340

  • Demoling F., Nilsson L.-O. and Bååth E. (2008) Bacterial and fungal response to nitrogen fertilization in three coniferous forest soils. Soil Biology and Biochemistry 40, 370-379

  • Törneman N., Yang X., Bååth E. and Bengtsson G. (2008) Spatial covariation of microbial community composition and polycyclic aromatic hydrocarbon concentration in a creosote-polluted soil. Environmental Toxicology and Chemistry 27, 1039-1046

  • Rinnan R., Nerg A.-M., Ahtoniemi P., Suokanerva H., Holopainen T., Kyrö E. and Bååth E. (2008) Plant-mediated effects of elevated ultraviolet-B radiation on peat microbial communities of a subarctic mire. Global Change Biology 14, 925-937

  • Rousk, J., Aldén Demoling, L. & Bååth, E. (2008) Examining the fungal and bacterial niche overlap using selective inhibitors in soil. FEMS MICROBIOLOGY ECOLOGY 63:350-358

  • Iovieno P. and Bååth E. (2008) Effect of drying and rewetting on bacterial growth rates in soil. FEMS Microbiology Ecology 65, 400-407

  • Meidute S., Demoling F. and Bååth E. (2008) Antagonistic and synergistic effects of fungal and bacterial growth in soil after adding different carbon and nitrogen sources. Soil Biology and Biochemistry 40, 2334-2343

  • Aldén Demoling L. and Bååth E. (2008) No long-term persistence of bacterial pollution-induced community tolerance in tylosin-polluted soil. Environmental Science and Technology 42, 6917-6921

  • Prinzing A., Dauber J., Hammer E., Hammouti N. & Böhning-Gaese K. (2008) Does an ant-dispersed plant, Viola reichenbachiana, suffer from dispersal under inundation disturbances? Basic and Applied Ecology 9 (2): 108-116

  • Olsson P.A., Hammer E.C., Wallander H. & Pallon J. (2008): Environmental phosphorus influences elemental uptake in the mycorrhizal fungus Glomus intraradices as revealed by PIXE analysis. Applied and Environmental Microbiology 74 (13): 4144-4148

  • Liénard, M., Strandh, M., Hedenström, E., Johansson, T. & Löfstedt, C. (2008) Key biosynthetic gene subfamily recruited for pheromone production prior to the extensive radiation of Lepidoptera. BMC Evolutionary Biology 8:270, doi:10.1186/1471-2148-8-270

  • Strandh, M., Johansson, T., Ahrén, D. & Löfstedt, C. (2008) Transcriptional analysis of the pheromone gland of the turnip moth, Agrotis segetum (Noctuidae), reveals candidate genes involved in pheromone production. INSECT MOLECULAR BIOLOGY 17:73-85

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Publications 2007
 

  • Åkerblom, S, Bååth, E, Bringmark, L & Bringmark, E (2007) Experimentally induced effects of heavy metal on microbial activity and community structure of forest mor layers. BIOLOGY AND FERTILITY OF SOILS 44 (1): 79-91

  • Demoling, F, Figueroa, D & Bååth, E. (2007) Comparison of factors limiting bacterial growth in different soils. SOIL BIOLOGY & BIOCHEMISTRY 39 (10): 2485-2495

  • Diaz-Ravina, M, de Anta, RC & Bååth, E. (2007) Tolerance (PICT) of the bacterial communities to copper in vineyards soils from Spain. JOURNAL OF ENVIRONMENTAL QUALITY 36 (6): 1760-1764

  • Kurland CG, Collins LJ, & Penny D (2007) The evolution of eukaryotes - Response. SCIENCE 316 (5824): 543-543

  • Kurland CG, Canbäck B, & Berg OG (2007) The origins of modem proteomes. BIOCHIMIE 89 (12): 1454-1463

  • Labidi, S, Nasr, H, Zouaghi, M & Wallander, H (2007) Effects of compost addition on extra-radical growth of arbuscular mycorrhizal fungi in Acacia tortilis ssp raddiana savanna in a pre-Saharan area. APPLIED SOIL ECOLOGY 35 (1): 184-192

  • Lenoir, L, Persson, T, Bengtsson, J, Wallander, H & Wiren, A (2007) Bottom-up or top-down control in forest soil microcosms? Effects of soil fauna on fungal biomass and C/N mineralisation. BIOLOGY AND FERTILITY OF SOILS 43 (3): 281-294

  • Nakano-Hylander, A & Olsson, PA. (2007) Carbon allocation in mycelia of arbuscular mycorrhizal fungi during colonisation of plant seedlings. SOIL BIOLOGY & BIOCHEMISTRY 39 (7): 1450-1458

  • Naurin, S., Bensch, S., Hansson, B., Johansson, T., Clayton, D.F., Albrekt, A.-S., von Schantz, T. & Hasselqvist, D. (2007) A microarray for large-scale genomic and transcriptional analyses of the zebra finch (Taeniopygia guttata) and other passerines. Molecular Ecology Resources 8:275–281, doi:10.1111/j.1471-8286.2007.01979

  • Nilsson, LO, Bååth, E, Falkengren-Grerup, U & Wallander, H (2007) Growth of ectomycorrhizal mycelia and composition of soil microbial communities in oak forest soils along a nitrogen deposition gradient. OECOLOGIA 153 (2): 375-384

  • Olsrud, M, Michelsen, A & Wallander, H (2007) Ergosterol content in ericaceous hair roots correlates with dark septate endophytes but not with ericold mycorrhizal colonization. SOIL BIOLOGY & BIOCHEMISTRY 39 (5): 1218-1221

  • Pallon, J, Wallander, H, Hammer, E, Marrero, NA, Auzelyte, V, Elfman, M, Kristiansson, P, Nilsson, C, Olsson, PA & Wegden, M. (2007) Symbiotic fungi that are essential for plant nutrient uptake investigated with NMP. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS 260 (1): 149-152

  • Pommier, T, Canbäck, B, Riemann, L, Boström, KH, Simu, K, Lundberg, P, Tunlid, A & Hagström, A (2007) Global patterns of diversity and community structure in marine bacterioplankton. MOLECULAR ECOLOGY 16 (4): 867-880

  • Postma, JWM, Olsson, PA & Falkengren-Grerup, U (2007) Root colonisation by arbuscular mycorrhizal, fine endophytic and dark septate fungi across a pH gradient in acid beech forests. SOIL BIOLOGY & BIOCHEMISTRY 39 (2): 400-408

  • Prinzing A, Dauber L, Hammer EC, Hammouti N & Bohning-Gaese K. (2007) Perturbed partners: opposite responses of plant and animal mutualist guilds to inundation disturbances. OIKOS 116 (8): 1299-1310

  • Prinzing A., Dauber J., Hammer E., Hammouti N. & Böhning-Gaese K. (2007) Does an ant-dispersed plant, Viola reichenbachiana, suffer from dispersal under inundation disturbances? BASIC AND APPLIED ECOLOGY In Press. Online since Jan 30

  • Rajashekar, B, Samson, P, Johansson, T, Tunlid, A (2007) Evolution of nucleotide sequences and expression patterns of hydrophobin genes in the ectomycorrhizal fungus Paxillus involutus. NEW PHYTOLOGIST 174 (2): 399-411

  • Rinnan, R, Michelsen, A, Bååth, E, Jonasson, S (2007) Mineralization and carbon turnover in subarctic heath soil as affected by warming and additional litter. SOIL BIOLOGY & BIOCHEMISTRY 39 (12): 3014-3023

  • Rinnan, R, Michelsen, A, Bååth, E & Jonasson, S (2007) Fifteen years of climate change manipulations alter soil microbial communities in a subarctic heath ecosystem. GLOBAL CHANGE BIOLOGY 13 (1): 28-39

  • Rousk, J & Bååth, E (2007) Fungal biomass production and turnover in soil estimated using the acetate-in-ergosterol technique. SOIL BIOLOGY & BIOCHEMISTRY 39 (8): 2173-2177

  • Rousk, J, Bååth, E, Göransson, H & Fransson, AM (2007) Assessing plant-microbial competition for P-33 using uptake into phospholipids. APPLIED SOIL ECOLOGY 36 (2-3): 233-237

  • Rousk, J & Bååth, E (2007) Fungal and bacterial growth in soil with plant materials of different C/N ratios FEMS MICROBIOLOGY ECOLOGY 62 (3): 258-267

  • Troein, C., Ahrén, D, Krogh, M. & Peterson, C. (2007) Is Transcriptional Regulation of Metabolic Pathways an Optimal Strategy for fitness? PLoS ONE 2(9): e855

  • Tunlid, A. (2007). Exploring the interaction between nematode-trapping fungi and nematodes using DNA microarrays. In: Fungi in the environment. (Gadd, G.M.,Watkinson, S.C., Dyer, P. S., eds). Cambridge University Press, Cambridge, pp. 255-268

 

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Publications 2006
 

  • Diaz-Ravina, M; Bååth, E; Martin, A; Carballas, T. (2006) Microbial community structure in forest soils treated with a fire retardant. BIOLOGY AND FERTILITY OF SOILS, 42 (6): 465-471

  • Goransson, H; Wallander, H; Ingerslev, M; Rosengren, U. (2006) Estimating the relative nutrient uptake from different soil depths in Quercus robur, Fagus sylvatica and Picea abies. PLANT AND SOIL, 286 (1-2): 87-97

  • Goransson, H; Rosengren, U; Wallander, H; Fransson, AM; Thelin, G. (2006) Nutrient acquisition from different soil depths by pedunculate oak. TREES-STRUCTURE AND FUNCTION 20 (3): 292-298

  • Hierno K, Alm R, Canback B, Matthiesen R, Trajkovski K, Bjork L, Roepstorff P, Emanuelsson C. (2006) Down-regulation of the strawberry Bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant. PROTEOMICS 6 (5): 1574-1587

  • Kurland CG, Collins LJ, Penny D. (2006) Genomics and the irreducible nature of eukaryote cells. SCIENCE 312 (5776): 1011-1014

  • Le Quere, A; Eriksen, KA; Rajashekar, B; Schutzenbubel, A; Canback, B; Johansson, T; Tunlid, A. 2006. Screening for rapidly evolving genes in the ectomycorrhizal fungus Paxillus involutus using cDNA microarrays. MOLECULAR ECOLOGY 15 (2): 535-550

  • Nilsson, LO; Wallander, H; Bååth, E; Falkengren-Grerup, U. (2006) Soil N chemistry in oak forests along a nitrogen deposition gradient. BIOGEOCHEMISTRY 80 (1): 43-55

  • Olsson, PA; Hansson, MC; Burleigh, SH. (2006) Effect of P availability on temporal dynamics of carbon allocation and Glomus intraradices high-affinity P transporter gene induction in arbuscular mycorrhiza. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 72 (6): 4115-4120

  • Rosengren U, Göransson H, Jönsson U, Stjernquist I, Thelin G, Wallander H. (2006) Functional biodiversity aspects on the nutrient sustainability in forests – importance of root distribution. JOURNAL OF SUSTAINABLE FORESTRY 21: 75-98

  • Schnurr-Putz, S; Bååth, E; Guggenberger, G; Drake, HL; Kusel, K. (2006) Compaction of forest soil by logging machinery favours occurrence of prokaryotes. FEMS MICROBIOLOGY ECOLOGY 58 (3): 503-516

  • Troedsson, U; Olsson, PA; Jarl-Sunesson, CI. (2006) Application of antisense transformation of a barley chitinase in studies of arbuscule formation by a mycorrhizal fungus. HEREDITAS 142: 65-72

  • Wallander, H; Lindahl, BD; Nilsson, LO. (2006) Limited transfer of nitrogen between wood decomposing and ectomycorrhizal mycelia when studied in the field. MYCORRHIZA 16 (3): 213-217

  • Wallander, H; Hagerberg, D; Aberg, G. (2006) Uptake of Sr-87 from microcline and biotite by ectomycorrhizal fungi in a Norway spruce forest. SOIL BIOLOGY & BIOCHEMISTRY 38 (8): 2487-2490

  • Wallander, H. (2006) External mycorrhizal mycelia - the importance of quantification in natural ecosystems. NEW PHYTOLOGIST 171 (2): 240-242

 

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Publications 2005
 

  • Ahren, D; Tholander, M; Fekete, C; Rajashekar, B; Friman, E; Johansson, T; Tunlid, A. (2005) Comparison of gene expression in trap cells and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum. MICROBIOLOGY-SGM 151: 789-803

  • Antonsen, H; Olsson, PA. (2005) Relative importance of burning, mowing and species translocation in the restoration of a former boreal hayfield: responses of plant diversity and the microbial community. JOURNAL OF APPLIED ECOLOGY 42 (2): 337-347.

  • Bååth, E; Diaz-Ravina, M; Bakken, LR. (2005) Microbial biomass, community structure and metal tolerance of a naturally Pb-enriched forest soil. MICROBIAL ECOLOGY 50 (4): 496-505

  • Gavito, ME; Olsson, PA; Rouhier, H; Medina-Penafiel, A; Jakobsen, I; Bago, A; Azcon-Aguilar, C. (2005) Temperature constraints on the growth and functioning of root organ cultures with arbuscular mycorrhizal fungi. NEW PHYTOLOGIST 168 (1): 179-188

  • Goldovsky, L., Janssen, P., Ahren, D., Audit, B., Cases, I., Darzentas, N., Enright, A.J., Lopez-Bigas, N., Peregrin-Alvarez, J.M., Smith, M., Tsoka, S., Kunin, V., Ouzounis, C.A. (2005) CoGenT++: an extensive and extensible data environment for computational genomics. BIOINFORMATICS 21, 3806-3810.

  • Hagerberg, D; Pallon, J; Wallander, H. (2005) The elemental content in the mycelium of the ectomycorrhizal fungus Piloderma sp during the colonization of hardened wood ash. MYCORRHIZA 15 (6): 387-392

  • Jorgensen, HB; Johansson, T; Canback, B; Hedlund, K; Tunlid, A. (2005) Selective foraging of fungi by collembolans in soil. BIOLOGY LETTERS 1 (2): 243-246

  • Karp, P.D., Ouzounis, C.A., Moore-Kochlacs, C., Goldovsky, L., Kaipa, P., Ahren, D., Tsoka, S., Darzentas, N., Kunin, V., Lopez-Bigas, N. (2005) Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. NUCLEIC ACIDS RESEARCH 33: 6083-6089.

  • Kasurinen A, Keinanen MM, Kaipainen S, Nilsson LO, Vapaavuori E, Kontro MH, Holopainen T. (2005) Below-ground responses of silver birch trees exposed to elevated CO2 and O-3 levels during three growing seasons. GLOBAL CHANGE BIOLOGY 11 (7): 1167-1179

  • Koljalg U, Larsson KH, Abarenkov K, Nilsson RH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T, Sen R, Taylor AFS, Tedersoo L, Vralstad T, Ursing BM. (2005) UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. NEW PHYTOLOGIST 166 (3): 1063-1068

  • Kunin, V., Ahrén, D., Goldovsky, L., Janssen, P., Ouzounis, C. (2005) Measuring genome conservation across taxa: divided strains and united kingdoms. NUCLEIC ACIDS RESEARCH 33: 616-622

  • Kurland CG (2005) What tangled web: barriers to rampant horizontal gene transfer. BIOESSAYS 27 (7): 741-747

  • Le Quere, A; Wright, DP; Söderström, B; Tunlid, A; Johansson, T. (2005) Global patterns of gene regulation associated with the development of ectomycorrhiza between birch (Betula pendula Roth.) and Paxillus involutus (Batsch) fr.. MOLECULAR PLANT-MICROBE INTERACTIONS 18 (7): 659-673.

  • Morel M, Jacob C, Kohler A, Johansson T, Martin F, Chalot M, Brun A. (2005) Identification of genes differentially expressed in extraradical mycelium and ectomycorrhizal roots during Paxillus involutus-Betula pendula ectomycorrhizal symbiosis. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71 (1): 382-391

  • Nasr, H; Ghorbel, MH; Wallander, H; Dommergues, YR. (2005) Selecting matched root architecture in tree pairs to be used for assessing N-2 fixation based on soil-(15) N-labelling. ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY 27 (2): 75-79

  • Nilsson, LO; Giesler, R; Bååth, E; Wallander, H. (2005) Growth and biomass of mycorrhizal mycelia in coniferous forests along short natural nutrient gradients. NEW PHYTOLOGIST 165 (2): 613-622

  • Olsson, PA; Johnson, NC. (2005) Tracking carbon from the atmosphere to the rhizosphere. ECOLOGY LETTERS 8 (12): 1264-1270.

  • Olsson, PA; van Aarle, IM; Gavito, ME; Bengtson, P; Bengtsson, G. (2005) C-13 incorporation into signature fatty acids as an assay for carbon allocation in arbuscular mycorrhiza. APPLIED AND ENVIRONMENTAL MICROBIOLOGY 71 (5): 2592-2599

  • Olsson, PA; Burleigh, SH; van Aarle, IM. (2005) The influence of external nitrogen on carbon allocation to Glomus intraradices in monoxenic arbuscular mycorrhiza. NEW PHYTOLOGIST 168 (3): 677-686

  • Pietikainen, J; Pettersson, M; Bååth, E. (2005) Comparison of temperature effects on soil respiration and bacterial and fungal growth rates. FEMS MICROBIOLOGY ECOLOGY 52 (1): 49-58

  • Stensmyr MC, Erland S, Hallberg E, Wallen R, Greenaway P, Hansson BS (2005) Insect-like olfactory adaptations in the terrestrial giant robber crab CURRENT BIOLOGY 15 (2): 116-121

  • van Aarle IM, Cavagnaro TR, Smith SE, Smith FA, Dickson S. (2005) Metabolic activity of Glomus intraradices in Arum- and Paris-type arbuscular mycorrhizal colonization NEW PHYTOLOGIST 166 (2): 611-618

  • Wallander, H; Pallon, J. (2005) Temporal changes in the elemental composition of Rhizopogon rhizomorphs during colonization of patches with fresh organic matter or acid-washed sand. MYCOLOGIA 97 (2): 295-303

  • Wallander, H; Fossum, A; Rosengren, U; Jones, H. (2005) Ectomycorrhizal fungal biomass in roots and uptake of P from apatite by Pinus sylvestris seedlings growing in forest soil with and without wood ash amendment. MYCORRHIZA 15 (2): 143-148

  • Wright, DP; Johansson, T; Le Quere, A; Söderström, B; Tunlid, A. (2005) Spatial patterns of gene expression in the extramatrical mycelium and mycorrhizal root tips formed by the ectomycorrhizal fungus Paxillus involutus in association with birch (Betula pendula) seedlings in soil microcosms. NEW PHYTOLOGIST 167 (2): 579-596

 

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Publications 2004
 

  • Ahrén, D., Faedo, M., Rajashekar, B. and Tunlid, A. (2004) Low genetic diversity among isolates of the nematode-trapping fungus Duddingtonia flagrans - evidence for a recent worldwide dispersion from a single common ancestor. Mycol. Res. 108: 1205-1214

  • Ahrén D, Troein C, Johansson T, Tunlid A. (2004) PHOREST: a web-based tool for comparative analyses of expressed sequence tag data. Molecular Ecology Notes 4: 311-314

  • Alsmark CM, Frank AC, Karlberg EO, Legault BA, Ardell DH, Canbäck B, Eriksson AS, Näslund AK, Handley SA, Huvet M, La Scola B, Holmberg M, Andersson SGE (2004) The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. Proceedings of the National  Academy of Sciences of the USA 101: 9716-9721

  • Bååth E, Nilsson LO, Göransson H, Wallander H. (2004) Can the extent of degradation of soil fungal mycelium during soil incubation be used to estimate ectomycorrhizal biomass in soil? Soil Biology & Biochemistry 36: 2105-2109

  • Canbäck B, Tamas I, Andersson SGE. (2004) A phylogenomic study of endosymbiotic bacteria. Molecular Biology & Evolution 21: 1110-1122

  • Emri T, Molnar Z, Pusztahelyi T, Rosén S, Pocsi I. (2004) Effect of vitamin E on autolysis and sporulation of Aspergillus nidulans. Applied Biochemistry & Biotechnology 118: 337-348

  • Fransson AM, Valeur I, Wallander H. (2004)The wood-decaying fungus Hygrophoropsis aurantiaca increases P availability in acid forest humus soil, while N addition hampers this effect. Soil Biology & Biochemistry 36: 1699-1705

  • Gormsen, D; Olsson, PA; Hedlund, K. (2004) The influence of collembolans and earthworms on AM fungal mycelium. APPLIED SOIL ECOLOGY, 27 (3): 211-220

  • Hoffland E, Kuyper TW, Wallander H, Plassard C, Gorbushina A, Haselwandter K, Holmström S, Landeweert R, Lundström U, Rosling A, Sen R, Smits M, van Hees P, van Breemen N. 2004. The role of fungi in weathering. Frontiers of Ecology & the Environment 2: 258-264

  • Johansson T, Le Quéré A, Ahrén D, Söderström B, Erlandsson R, Lundeberg J, Uhlén M, Tunlid A. (2004) Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue. Molecular Plant-Microbe Interactions 17: 201-215

  • Klamer M, Bååth E. (2004) Estimation of conversion factors for fungal biomass determination in compost using ergosterol and the PLFA 18:2w6,9. Soil Biology & Biochemistry 36: 57-65

  • Laslett D, Canbäck B. (2004) ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Research 32: 11-16

  • Le Quéré A, Schützendübel A, Rajashekar B, Canbäck B, Hedh J,  Erland S, Johansson T, Tunlid A. (2004) Divergence in gene expression related to variation in host specificity of an ectomycorrhizal fungus. Molecular Ecology 13: 3809-3819

  • Molnar Z, Meszaros E, Szilagyi Z, Rosén S, Emri T, Pocsi I. (2004) Influence of fadA(G203R) and Delta flba mutations on morphology and physiology of submerged Aspergillus nidulans cultures. Applied Biochemistry & Biotechnology 118: 349-360

  • Nielsen KB, Kjøller R, Olsson PA, Schweiger PF, Andersen FO, Rosendahl S. (2004) Colonisation and molecular diversity of arbuscular mycorrhizal fungi in the aquatic plants Littorella uniflora and Lobelia dortmanna in southern Sweden. Mycological Research 108: 616-625

  • Nilsson RH, Rajashekar B, Larsson KH, Ursing BM. (2004) galaxieEST: addressing EST identity through automated phylogenetic analysis. BMC Bioinformatics 5:87

  • Nordbring-Hertz B. (2004) Morphogenesis in the nematode-trapping fungus Arthrobotrys oligospora - an extensive plasticity of infection structures. Mycologist 18:125-133

  • Olsrud M, Melillo JM, Christensen TR, Michelsen A, Wallander H, Olsson PA. (2004) Response of ericoid mycorrhizal colonisation and functioning to global change factors. New Phytologist 162: 459-469

  • Olsson, PA; Eriksen, BE; Dahlberg, A. (2004) Colonization by arbuscular mycorrhizal and fine endophytic fungi in herbaceous vegetation in the Canadian High Arctic. CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE 82 (11): 1547-1556

  • Pettersson M, Bååth E. (2004) Effects of the properties of the bacterial community on pH adaptation during recolonisation of a humus soil. Soil Biology & Biochemistry 36, 1383-1388

  • Rajapaksha RMCP, Tobor-Kaplon MA, Bååth E. (2004) Metal toxicity affects fungal and bacterial activities in soil differently. Applied & Environmental Microbiology 70, 2966-2973

  • Sheppard LJ, Wallander H. (2004) Atmospheric nitrogen - pollutant or fertiliser. In : (eds L de Kok and I. Stulen) Nitrogen acquisition and assimilation in higher plants. Plant Ecophysiology, volume 3. Kluwer Academic Publishers, The Netherlands

  • Söderberg KH, Bååth E. (2004) The influence of nitrogen fertilization on bacterial activity in the rhizosphere of barley. Soil Biology & Biochemistry 36, 195-198

  • Söderberg KH, Probanza A, Jumpponen A, Bååth E. (2004) The microbial community in the rhizosphere determined by community-level physiological profiles (CLPP) and direct soil- and cfu-PLFA techniques. Applied Soil Ecology 25, 135-145

  • Wallander H, Göransson H, Rosengren U. (2004) Production, standing biomass and natural abundance of 15 N and 13 C in ectomycorrhizal mycelia collected at different soil depths in two forest types. Oecologia 139: 89-97

  • Wallander H, Hagerberg D. (2004) Do ectomycorrhizal fungi have a significant role in weathering of minerals in forest soil? Symbiosis 37: 249-257

 

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Publications 2003
 

  • VAN AARLE, I.M. AND OLSSON, P.A. (2003) Fungal lipid accumulation and development of mycelial structures in two arbuscular mycorrhizal fungi. Applied and Environmental Microbiology 69:6762-6767.

  • VAN ARLE. I.M., SÖDERSTRÖM, B. AND OLSSON, P.A. (2003) Growth and interactions of arbuscular mycorrhizal fungi in soils from limestone and acid rock habitats. Soil Biology and Biochemistry 35:1557-1564

  • AHRÉN, D. AND TUNLID, A. (2003) Evolution of parasitism in nematode-trapping fungi. J. Nematology 35:194-197

  • ANDERSSON, B.E., LUNDSTEDT, S., TORNBERG, K., SCHNURER, Y., ÖBERG, L. AND MATTIASSON, B. (2003) Incomplete degradation of polycyclic aromatic hydrocarbons in soil inoculated with wood-rotting fungi and their effect on the indigenous soil bacteria. Environmental Toxicology and Chemistry 22:1238-1243

  • BALOGH, J., TUNLID, A. AND ROSÉN, S. (2003) Delection of a lectin gene does not affect the phenotype of the nematodetrapping fungus Arthrobotrys oligospora Fung. Genet. Biol. 39:128-135

  • BURLEIGH, S.H., KRISTENSEN, B. AND BECHMANN, I.E. (2003) A plasma membrane zinc transporter from Medicago trucatula is up-regulated in roots by Zn fertilization, yet down-regulated by arbuscular mycorrhizal colonization. Plant Molecular Biology 52:1077-1088

  • BÅÅTH, E. AND WALLANDER, H. 2003. Soil and rhizosphere microorganisms have the Q10 for respiration in a model system. Global Change Biology 9:1788-1791

  • BÅÅTH, E. (2003) The use of neutral lipid fatty acids to indicate the physiological conditions of soil fungi. Microbial Ecology 45:373-383

  • BÅÅTH, E. AND ANDERSSON, T.H. (2003) Comparison of soil fungal/bacterial ratios in a pH gradient using physiological och PLFA-based techniques. Soil Biology and Biochemistry 35:955-963

  • DICKSON, S., SCHWEIGER, P., SMITH, F.A., SÖDERSTRÖM, B. AND SMITH, S. (2003) Paired arbuscules in the Arum-type arbuscular mycorrhizal symbiosis with Linum usitatissimum . Canadian Journal of Botany 81:457-463.

  • FRANSSON, A.M., VAN AARLE, I.M., OLSSON, P.A. AND TYLER, G. (2003) Plantago lanceolata L. and Rumes acetosella L. differ in their utilisation of soil phosphorous fractions. Plant and Soil 248:285-295

  • GAVITO, M.E. AND OLSSON, P.A. (2003) Allocation of plant carbon to foraging and storage in arbuscular mycorrhizal fungi. FEMS Microbiology Ecology 45:181-187

  • HAGERBERG, D., THELIN, G. AND WALLANDER, H. (2003) The production of ectomycorrhizal mycelium in forests: Relation between forest nutrient status and local mineral sources. Plant and Soil 252:279-290

  • HÖGBERG, M.N., BÅÅTH, E., NORDGREN, A., ARNEBRANT, K AND HÖGBERG, P. (2003) Contrasting effects of nitrogen availability on plant carbon supply to mycorrhizal fungi and saprotrophs a hypotheses based on field observations in boreal forest. New Phytologist 160:225-238

  • JANSSON, H-B-, ÅKESSON, H. (2003) Extracellular matrix, esterase and the phytotoxin prehelminthosporol in infection of barley leaves by Bipolaris sorokiniana . European Journal of Plant Pathology 109:599-605

  • MAHMOOD, S. (2003) Colonization of spruce roots by two interacting ectomycorrhizal fungi in wood ash amended substrates. FEMS microbiology Letters 221:81-87

  • MAHMOOD, S., FINLAY, R.D., FRANSSON, A-M-, WALLANDER, H. (2003)  Effects of hardened wood ash on microbial activity, plant growth and nutrient uptake by ectomycorrhizal spruce seedlings. FEMS Microbiology Ecology 43, 121-131.

  • NILSSON, L-O. AND WALLANDER, H. (2003) The production of external mycelium by ectomycorrhizal fungi in a Norway spruce forest was reduced in response to nitrogen fertilization. New Phytologist 158:409-416

  • OLSSON, P-A., LARSSON, L., BAGO, B., WALLANDER, H. AND VAN AARLE, I.M. (2003) Ergosterol and fatty acids for biomass extimation of mycorrhizal fungi. New Phytologist 159:5-7.

  • PETTERSSON, M. AND BÅÅTH, E. (2003) Temperature-dependent changes in the soil bacterial community in limed and unlimed soil. FEMS Microbiology Ecology 45:13-21

  • PETTERSSON, C. AND BÅÅTH, E. (2003) The rate of change of a soil bacterial community after liming as a function of temperature. Microbial Ecology 46:177-186

  • RANNEKLEV, S. AND BÅÅTH, E. (2003) Use of phospholipids fatty acids to detect previous self.heating events in stored peat. Applied and Environmental Microbiology 69:3532-3539.

  • TORNBERG, K., BÅÅTH, E. AND OLSSON, S. (2003) Fungal growth and effects of different wood decomposing fungi on the indigenous bacterial community of polluted and unpolluted soils. Biology and Fertility of Soils 37:190-197

  • TUNLID, A. (2003) Exploring plant-microbe interactions using DNA microarrays. New Phytol. 158:227-238

  • WALLANDER, H., MAHMOOD, S., HAGERBERG, D., JOHANSSON, L. AND PALLON, J. (2003) Elemental composition of ectomycorrhizal mycelia identified with PCR/RFLP and grown in contact with apatite or wood ash in forest soil. FEMS Microbiology Ecology 44:57-65

  • WALLANDER, H., NILSSON, L-O., HAGERBERG, D. AND ROSENGREN, U. (2003) Direct estimates of C:N ratios of ectomycorrhizal mycelia collected from Norway spruce forest soils. Soil Biology and Biochemistry 35:997-999.

 

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Publications 2002
 

  • ÅHMAN J, JOHANSSON T, OLSSON M, PUNT PJ, van den HONDEL CAMJJ, & TUNLID A. (2002) Improving the pathogenicity of a nematode-trapping fungus by genetic engineering of a subtilisin with nematotoxic activity. Applied and Environmental Microbiology 68:3408-3415

  • FRANSSON, A.-M., VAN AARLE, I. M., OLSSON, P. A. & TYLER, G. (2002) Plantago lanceolata L. and Rumex acetosella L. differ in their utilisation of soil phosphorous fractions. Plant and Soil 248: 285-295

  • HAGERBERG, D. & WALLANDER, H. (2002) The impact of forest residue removal and wood ash amendment on the growth of the ectomycorrhizal external mycelium. FEMS Microbiology Ecology 39:130-146

  • JOHANSSON, T., NYMAN P.O. & CULLEN D. (2002) Differential regulation of mnp2, a new manganese peroxidase-encoding gene from the ligninolytic fungus Trametes versicolor PRL 572. Applied and Environmental Microbiology 68:2077-2080

  • LE QUÉRÉ, A., JOHANSSON, T. & TUNLID, A. (2002) Size and complexity of the nuclear genome of the ectomycorrhizal fungus Paxillus involutus. Fungal Genetics and Biology 36:234-241

  • MAHMOOD, S., FINLAY, R.D., FRANSSON, A.-M. & WALLANDER, H. (2002) Effects of hardened wood ash on microbial activity, plant growth and nutrient uptake by ectomycorrhizal spruce seedlings. FEMS Microbiology Ecology 43, 121-131

  • MAHM OOD, S., FINLAY, R.D., WALLANDER, H. & ERLAND, S. (2002) Ectomycorrhizal colonization of roots and ash granules in a spruce forest treated with granulated wood ash. Forest Ecology and Management 160:65-74

  • OLSSON, P. A., KJELLBOM, P. & ROSENDAHL, L. (2002)  Rhizobium colonisation induced changes in membrane-bound and soluble hydroxyproline-rich glycoprotein composition in pea. Physologia Plantarum 114:652-660

  • OLSSON, P. A., JAKOBSEN, I. & WALLANDER, H. (2002) Foragin strategies and resource allocation of mycorrhizal fungi in a patchy environment. In: Eds. M.G.A. van der Heijden & I. Sanders: Mycorrhizal Ecology, Ecological Studies 157:93-115

  • OLSSON, P. A., VAN AARLE, I. M., ALLAWAY, W. G., ASHFORD, A. E. & ROUHIER, H. (2002) Phosphorous effects on metabolic processes in monoxenic arbuscular mycorrhiza cultures. Plant Physiology 130:1162-1171

  • SCHWEIGER, P.F., ROUHIER, H. & SÖDERSTRÖM, B. (2002) Visualization of ectomycorrhizal rhizomorph structure using laser scanning confocal microscopy. Mycological Research 106:349-354

  • SÖDERBERG, K. H.,, OLSSON, P. A. & BÅÅTH, E. (2002) Structure and activity of the bacterial community in the rhizosphere of different plant species and the effect of arbuscular mycorrhizal colonisation. FEMS Microbiology Ecology 40:223-231

  • SÖDERSTRÖM, B. (2002) Challenges for mycorrhizal research into the new millennium. Plant and Soil 244:1-7

  • TORNBERG, K.  & OLSSON, S. (2002)  Detection of hydroxyl radicals produced by wood-decomposing fungi. FEMS Microbiology Ecology. 40(1):13-20

  • WALLANDER. H., JOHANSSON, L. & PALLON, J. (2002) PIXIE analysis to  estimate the elemental composition of ectomycorrhizal rhizomorphs grown in contact with different minerals in forest soil. FEMS Microbiology Ecology 39:147-156

  • WALLANDER, H. (2002)  Utilization of organic nitrogen at two different substrate pH by different ectomycorrhizal fungi growing in symbiosis with Pinus sylvestris seedlings. Plant and Soil (accepted).

  • VAN AARLE, I. M., OLSSON, P. A. & SÖDERSTRÖM, B. (2002) Arbuscular mycorrhizal fungi respond to the substrate pH of their extraradical mycelium by altered growth and root colonization. New Phytologist 155:173-182

  • VAN AARLE, I.M., ROUHIER, H. & SAITO, M. (2002) Phosphatase activities of arbuscular mycorrhizal intraradical and extraradical mycelium, and their relation to phosphorous availalbility. Mycological Research xx

 

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Publications 2001
 

  • van AARLE, I. M., OLSSON, P. A. & SÖDERSTRÖM, B. (2001) Microscopic detection of phosphatase activity of saprophytic and arbuscular mycorrhizal fungi using a fluorogenic substrate. Mycologia 93:17-24

  • ALDÉN, L., DEMOLING F. & BÅÅTH E. (2001) Rapid method of determining factors limiting bacterial growth in soil. Applied and Environmental Microbiology 67:1830-1838

  • APOGA, D., EK, B. & TUNLID, A. (2001) Analysis of proteins in the extracellular matrix of the plant pathogenic fungus Bipolaris sorokiniana using 2-D gel electrophoresis and MS/MS. FEMS Microbiol Lett 197:145-150.

  • APOGA, D., JANSSON, H-B. & TUNLID, A. (2001) Adhesion of conidia and germlings of the plant pathogenic fungus Bipolaris sorokiniana to solid surfaces. Mycol. Res. 105, 1251-1260

  • BÅÅTH, E., PETTERSSON, M. & SÖDERBERG, K.H. (2001) Adaptation of a rapid and economical microcentrifugation method to measure thymidine and leucine incorporation of soil bacteria. Soil Biology and Biochemistry 33:1571-1574

  • BÅÅTH, E. (2001) Estimation of fungal growth rates in soil using 14C-acetate incorporation into ergosterol. Soil Biology and Biochemistry 33:2011-2018

  • BIDERTONDO, M.I., EK, H. WALLANDER, H. SÖDERSTRÖM, B. (2001) Do nutrient additions alter carbon sink strength of ectomycorrhizal fungi? New Phytologist 151:543-550

  • COURTOIS, S., FROSTEGÅRD, Å., GÖRANSSON, P., DEPRET, G., JEANNIN, P. & SIMONET, P. (2001) Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environmental Microbiology 3:431-439

  • DIAZ-RAVIÑA, M. & BÅÅTH, E. (2001) Response of soil bacterial communities pre-exposed to different metals and reinoculated in an unpolluted soil. Soil Biology and Biochemistry 33:241-248

  • EILAND, F., KLAMER, M., LIND, A.-M., LETH, M. & BÅÅTH, E. (2001) Influence of initial C/N ratio on chemical and microbial composition during long term composting of straw. Microbial Ecology 41:272-280

  • JANSSON, H-B. (2001). Methods to monitor growth and activity of nematode-trapping fungi in soil. In Tri-Trophic Interactions in the Rhizosphere and Root-Health Nematode-Fungal-Bacterial Interrelationships. (R. Sikora, ed.). IOBC Bulletin 24, 65-68

  • KHALIL, S., BÅÅTH, E., ALSENIUS, B., ENGLUND, J.-E., SUNDIN, P., GERTSSON, U.E. & JENSÉN, P. (2001) A comparison of sole carbon source utilization patterns and phospholipid fatty acid profiles to detect changes in the root microflora of hydroponically grown crops. Canadian Journal of Microbiology 47:302-308

  • LOPEZ-LLORCA, L.V. & JANSSON, H-B. (2001) Bioversidad del suelo: Control Biológico de nematodos fitopatógenos por hongos nematófagos. Cuadrdernos de Bioversidad 6:12-15

  • MAHMOOD, S., FINLAY, R D., ERLAND, S. & WALLANDER, H. (2001) Solubilization and colonisation of wood ash by ectomycorrhizal fungi isolated from a wood ash fertilised spruce forest. FEMS Microbiology Ecology 3:151-161

  • PERSSON, C. (2001) Growth of nematode-trapping fungi determined using a radioactive tracing method. IOBS/wprs Bulletin 24:21-126

  • RANNEKLEV, S. & BÅÅTH, E. (2001) Temperature-driven adaptation of the bacterial community in peat measured by using thymidine and leucine incorporation. Applied and Environmental Microbiology 67:1116-1122

  • ROUHIER, H. & USUDA, H. (2001) Spatial and temporal distribution of sucrose synthase in the radish hypocotyl in relation to thickening growth. Plant-and-Cell-Physiology 42:583-593

  • TIKHONOV, V.E., LOPEZ-LLORCA, L.V., JANSSON, H-B., MONTFORT, E. & SALINAS, J. (2001) Chitinases produced by the biocontrol agents Verticillium suchlasporium and Verticillium chlamydosporium. IOBC Bulletin 25

  • WALLANDER, H., NILSSON, L-O., HAGERBERG, D. & BÅÅTH, E. (2001) Estimation of the Biomass and Seasonal Growth of External Mycelium of Ectomycorrhizal Fungi in the Field. New Phytologist 151:753-760

 

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Publications 1993-2000

 

Microbial Ecology, The Ecology Building, Lund University, SE-223 62 Lund, Sweden

Last updated 2009-10-02